UK Public Sector Code by Organisation

An R package to standardise methods used in Public Health Scotland (https://public-health-scotland.github.io/phsmethods/)

Standard R templates and project structure for Public Health Scotland (https://public-health-scotland.github.io/phstemplates/)

Code to create Public Health Scotland's Hospital Acute Care Activity publication

Standard Graphic Styles for use in Public Health Scotland (https://public-health-scotland.github.io/phsstyles/)

Functions to extract and interact with data from the Scottish Health and Social Care Open Data platform.

Code behind re-development of online ScotPHO profiles shiny app

Reproducible Analytical Pipeline of the Hospital Standardised Mortality Ratio (HSMR) quarterly publication

A Public Health Scotland R shiny app for surveillance of COVID-19 and respiratory illnesses in Scotland

Code used to prepare data for indicators in ScotPHO's profiles

Technical documentation, including guidance and best practice for Public Health Scotland (PHS)

An R package for working with the SLFs

This repo is for the syntax used for the PHS Source Linkage File project

The Mental Health Team's repo for the Mental Health Quality Indicators Dashboard

Reproducible Analytical Pipeline (RAP) for Dementia Post-Diagnostic Support (PDS) management reports and publication.

Code to produce the Scottish Pregnancy, Births and Neonatal Data dashboard (SPBAND)

PHS Lookups

A collection of best practice examples for use by LIST team members.

A patient-level dataset for outpatient mental health in Scotland.

This repository contains the code for analysing the 2025 health and care experience survey

Preparing geography and population lookups used to produce indicator data

Processing of Quality Performance Indicators data, as part of the National Cancer Quality Programme (Scotland).

What the Package Does (One Line, Title Case)

This repo helps to prepare your vscode in the new Posit

Easily install and load packages developed in PHS

Code used to prepare data for ScotPHO's website

Code for production of the National Indicators

Code for extracting survey data from UK Data Service/Archive microdata files and processing for the ScotPHO online profiles app.

Repository to hold all code relating to honours project looking at prescribing forecasting

This Python Shiny app template includes customizable styles that help you brand your app

Code for construction of the dementia index

SNAP - Scottish Robotic Assisted Surgery Audit

Public repository for hdFA safety study code

Functions and templates for the Scottish National Audit Programme

Genomics base repository template

Public Health Scotland's SARS-CoV-2 assembly pipeline.

R scripts to run the PHS heat-impacts DLNM

Details of a Scotland-wide cohort study to assess RSVpreF vaccine safety in pregnancy

A nextflow-based workflow for running ncov-tools

Suppression of Sensitive Numbers for Public Facing Reports

Output repo for the General Practice List Size and Demographics Shiny app.

Scripts for GPD team business as usual work such as creating GPD files

A general file structure for a new R package

A bespoke request from Scottish Gov asking for a cost per head figure for staff costs using NRAC methodology.

Repository for data quality reporting by the PHS Data Management Vaccines team.

R Shiny dashboard to display the metadata for the health & wellbeing catalogue.

This code produces the shiny app chart in the Deaths and life expectancy > Data > Scotland section of the ScotPHO website.

An interactive, online introduction to python training for employees in Public Health Scotland.

Python package with functions to interact with data from the Scottish Health and Social Care Open Data platform.