UK Public Sector Code by Organisation

An R package to standardise methods used in Public Health Scotland (https://public-health-scotland.github.io/phsmethods/)

Standard R templates and project structure for Public Health Scotland (https://public-health-scotland.github.io/phstemplates/)

Code to create Public Health Scotland's Hospital Acute Care Activity publication

Standard Graphic Styles for use in Public Health Scotland (https://public-health-scotland.github.io/phsstyles/)

Functions to extract and interact with data from the Scottish Health and Social Care Open Data platform.

Reproducible Analytical Pipeline of the Hospital Standardised Mortality Ratio (HSMR) quarterly publication

A Public Health Scotland R shiny app for surveillance of COVID-19 and respiratory illnesses in Scotland

Code behind re-development of online ScotPHO profiles shiny app

Code used to prepare data for indicators in ScotPHO's profiles

Technical documentation, including guidance and best practice for Public Health Scotland (PHS)

An R package for working with the SLFs

This repo is for the syntax used for the PHS Source Linkage File project

Reproducible Analytical Pipeline (RAP) for Dementia Post-Diagnostic Support (PDS) management reports and publication.

The Mental Health Team's repo for the Mental Health Quality Indicators Dashboard

Code to produce the Scottish Pregnancy, Births and Neonatal Data dashboard (SPBAND)

A patient-level dataset for outpatient mental health in Scotland.

A collection of best practice examples for use by LIST team members.

PHS Lookups

This repository contains the code for analysing the 2025 health and care experience survey

Preparing geography and population lookups used to produce indicator data

Processing of Quality Performance Indicators data, as part of the National Cancer Quality Programme (Scotland).

What the Package Does (One Line, Title Case)

Easily install and load packages developed in PHS

This repo helps to prepare your vscode in the new Posit

This repo contains the code for the FLAG (Farrington localised aberration guide) surveillance system and is managed by members of the Routine Surveillance and Health Protection (RSHP) team at PHS.

Code used to prepare data for ScotPHO's website

Shiny App for performing Statistical Disclosure Control (SDC)

Code for production of the National Indicators

SNAP - Scottish Robotic Assisted Surgery Audit

This Python Shiny app template includes customizable styles that help you brand your app

Code for extracting survey data from UK Data Service/Archive microdata files and processing for the ScotPHO online profiles app.

Public repository for hdFA safety study code

Functions and templates for the Scottish National Audit Programme

Code for construction of the dementia index

Genomics base repository template

Public Health Scotland's SARS-CoV-2 assembly pipeline.

R scripts to run the PHS heat-impacts DLNM

Details of a Scotland-wide cohort study to assess RSVpreF vaccine safety in pregnancy

A nextflow-based workflow for running ncov-tools

Suppression of Sensitive Numbers for Public Facing Reports

Output repo for the General Practice List Size and Demographics Shiny app.

Scripts for GPD team business as usual work such as creating GPD files

A general file structure for a new R package

A bespoke request from Scottish Gov asking for a cost per head figure for staff costs using NRAC methodology.

Repository for data quality reporting by the PHS Data Management Vaccines team.

R Shiny dashboard to display the metadata for the health & wellbeing catalogue.

Dashboard development to present data from a patient-level dataset for outpatient mental health in Scotland.

This code produces the shiny app chart in the Deaths and life expectancy > Data > Scotland section of the ScotPHO website.

An interactive, online introduction to python training for employees in Public Health Scotland.

Python package with functions to interact with data from the Scottish Health and Social Care Open Data platform.